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26 Commits

Author SHA1 Message Date
Christoph Auer
70d68b6164 feat: Add option to define page range (#852) 
Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
 2025-01-31 15:23:00 +01:00
Panos Vagenas
88a0e66adc feat: add Docling JSON ingestion (#783) 
* feat: add Docling JSON ingestion

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* update conversion as per review comments, add tests, revert Docling JSON disambiguation, document intricacies

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* Update docling/backend/json/docling_json_backend.py

Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

---------

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
 2025-01-24 18:05:23 +01:00
Luke Harrison
0ee849e8bc feat: added http header support for document converter and cli (#642) 
* added http header support for document converter and cli

Signed-off-by: Luke Harrison <Luke.Harrison1@ibm.com>

* fixed formatting and typing issues

Signed-off-by: Luke Harrison <Luke.Harrison1@ibm.com>

* use pydantic to parse dict

suggested by @dolfim-ibm

Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Signed-off-by: Luke Harrison <luke.harrison1@ibm.com>

---------

Signed-off-by: Luke Harrison <Luke.Harrison1@ibm.com>
Signed-off-by: Luke Harrison <luke.harrison1@ibm.com>
Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
 2025-01-07 10:15:14 +01:00
Lucas Morin
fd034802b6 feat: Create a backend to transform PubMed XML files to DoclingDocument (#557) 
Signed-off-by: lucas-morin <lucas.morin222@gmail.com>
 2024-12-17 19:27:09 +01:00
Cesar Berrospi Ramis
4e087504cc feat: create a backend to parse USPTO patents into DoclingDocument (#606) 
* feat: add PATENT_USPTO as input format

Signed-off-by: Cesar Berrospi Ramis <ceb@zurich.ibm.com>

* feat: add USPTO backend parser

Add a backend implementation to parse patent applications and
grants from the United States Patent Office (USPTO).

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* refactor: change the name of the USPTO input format

Change the name of the patent USPTO input format to show the typical format (XML).

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* refactor: address several input formats with same mime type

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* refactor: group XML backend parsers in a subfolder

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* chore: add safe initialization of PatentUsptoDocumentBackend

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

---------

Signed-off-by: Cesar Berrospi Ramis <ceb@zurich.ibm.com>
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
 2024-12-17 16:35:23 +01:00
Christoph Auer
aca57f0527 feat: docling-parse v2 as default PDF backend (#549) 
* Move to_docling_document from ds-glm to this repo

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Upgrade to ds-glm 1.0 and docling-parse 3.0

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update lock

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fix DP2 backend code, change CLI default backend

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
 2024-12-09 13:26:17 +01:00
Christoph Auer
34c7c79858 fix: improve handling of disallowed formats (#429) 
* fix: Fixes and tests for StopIteration on .convert()

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* fix: Remove unnecessary case handling

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* fix: Other test fixes

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* improve handling of unsupported types

- Introduced new explicit exception types instead of `RuntimeError`
- Introduced new `ConversionStatus` value for unsupported formats
- Tidied up converter member typing & removed asserts

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* robustify & simplify format option resolution

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* rename new status, populate ConversionResult errors

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Co-authored-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
 2024-12-03 12:45:32 +01:00
Michele Dolfi
7b013abcf3 fix: python3.9 support (#396) 
* fixes for python3.9

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* pin docling-parse with python3.9 wheels

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* update deps

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-11-20 15:21:40 +01:00
Michele Dolfi
32ebf55e33 fix: propagate document limits to converter (#388) 
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-11-20 08:36:51 +01:00
Peter W. J. Staar
926dfd29d5 feat: added excel backend (#334) 
* feat: added excel backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* first msexcel backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* added tooling for the cli

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* first working version for excel parsing of tables

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* added proper typing for mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* added proper typing for mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* refactor EXCEL to XLSX

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* added the unit tests

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* ran poetry lock

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* adding images to output [WIP]

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* reformatted the code

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* updated the msexcel

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* updated the msexcel (2)

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* added tests for merged cells in excel

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* reformatted the code

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

---------

Signed-off-by: Peter Staar <taa@zurich.ibm.com>
 2024-11-19 12:21:17 +01:00
Michele Dolfi
904d24d600 fix: allow to explicitly initialize the pipeline (#189) 
* feat: allow to explicitly initialize the pipeline

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* clean examples

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-10-30 17:54:53 +01:00
Christoph Auer
2a2c65bf4f feat: Add pipeline timings and toggle visualization, establish debug settings (#183) 
* Add settings to turn visualization on or off

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Add profiling code to all models

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Refactor and fix profiling codes

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Visualization codes output PNG to debug dir

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fixes for time logging

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Optimize imports

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update lockfile

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Add start_timestamps to ProfilingItem

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
 2024-10-30 15:04:19 +01:00
Christoph Auer
3023f18ba0 feat: Support AsciiDoc and Markdown input format (#168) 
* updated the base-model and added the asciidoc_backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* updated the asciidoc backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Ensure all models work only on valid pages (#158)

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* ci: run ci also on forks (#160)


---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>

* fix: fix legacy doc ref (#162)

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* docs: typo fix (#155)

* Docs: Typo fix

- Corrected spelling of invidual to automatic

Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>

* add synchronize event for forks

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>

* feat: add coverage_threshold to skip OCR for small images (#161)

* feat: add coverage_threshold to skip OCR for small images

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* filter individual boxes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* rename option

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* chore: bump version to 2.1.0 [skip ci]

* adding tests for asciidocs

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* first working asciidoc parser

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* reformatted the code

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* adding test_02.asciidoc

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Drafting Markdown backend via Marko library

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* work in progress on MD backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* md_backend produces docling document with headers, paragraphs, lists

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Improvements in md parsing

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Detecting and assembling tables in markdown in temporary buffers

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Added initial docling table support to md_backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Cleaned code, improved logging for MD

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixes MyPy requirements, and rest of pre-commit

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed example run_md, added origin info to md_backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* working on asciidocs, struggling with ImageRef

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* able to parse the captions and image uri's

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Update all backends with proper filename in DocumentOrigin

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update to docling-core v2.1.0

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fixes for MD Backend, to avoid duplicated text inserts into docling doc

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fix styling

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Added support for code blocks and fenced code in MD

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* cleaned prints

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Added proper processing of in-line textual elements for MD backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed issues with duplicated paragraphs and incorrect lists in pptx

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed issue with group ordeering in pptx backend, added gebug log into run with formats

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

---------

Signed-off-by: Peter Staar <taa@zurich.ibm.com>
Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>
Co-authored-by: Peter Staar <taa@zurich.ibm.com>
Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Co-authored-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Co-authored-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Maksym Lysak <mly@zurich.ibm.com>
 2024-10-23 16:14:26 +02:00
Christoph Auer
7d3be0edeb feat!: Docling v2 (#117) 
---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Maxim Lysak <mly@zurich.ibm.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Co-authored-by: Maxim Lysak <mly@zurich.ibm.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
 2024-10-16 21:02:03 +02:00
Fasal Shah
d412c363d7 fixed unload pdf backend resources (#129) 
Signed-off-by: faisal shah <fashah@redhat.com>
Co-authored-by: faisal shah <fashah@redhat.com>
 2024-10-08 10:46:43 +02:00
Maxim Lysak
2422f706a1 feat: new torch-based docling models (#120) 
---------

Signed-off-by: Maxim Lysak <mly@zurich.ibm.com>
Co-authored-by: Maxim Lysak <mly@zurich.ibm.com>
 2024-10-03 18:42:33 +02:00
Christoph Auer
d6df76f90b feat: Support tableformer model choice (#90) 
* Support tableformer model choice

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update datamodel structure

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update docs

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Cleanup

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Add test unit for table options

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Ensure import backwards-compatibility for PipelineOptions

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update README

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Adjust parameters on custom_convert

Signed-off-by: Christoph Auer <60343111+cau-git@users.noreply.github.com>

* Update Dockerfile

Signed-off-by: Christoph Auer <60343111+cau-git@users.noreply.github.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Christoph Auer <60343111+cau-git@users.noreply.github.com>
 2024-09-26 21:37:08 +02:00
Panos Vagenas
e46a66a176 fix: refine conversion result (#52) 
- fields `output` & `assembled` need not be optional
- introduced "synonym" `ConversionResult` for `ConvertedDocument` & deprecated the latter

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
 2024-08-27 11:50:43 +02:00
Michele Dolfi
8cc147bc56 fix: align output formats (#49) 
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-08-26 13:30:26 +02:00
Christoph Auer
a294b7e64a feat: Page-level error reporting from PDF backend, introduce PARTIAL_SUCCESS status (#47) 
* Put safety-checks for failed parse of pages

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Introduce page-level error checks

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Bump to docling-parse 1.1.1

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Introduce page-level error checks

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
 2024-08-23 16:18:41 +02:00
Christoph Auer
a8c6b29a67 feat: Upgrade docling-parse PDF backend and interface to use page-by-page parsing (#44) 
* Use docling-parse page-by-page

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Propagate document_hash to PDF backends, use docling-parse 1.0.0

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Upgrade lockfile

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* repin after more packages on pypi

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-08-22 13:49:37 +02:00
Christoph Auer
e94d317c02 feat: Add adaptive OCR, factor out treatment of OCR areas and cell filtering (#38) 
* Introduce adaptive OCR

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Factor out BaseOcrModel, add docling-parse backend tests, fixes

* Make easyocr default dep

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
 2024-08-20 15:28:03 +02:00
Michele Dolfi
78347bf679 feat: allow computing page images on-demand with scale and cache them (#36) 
* feat: allow computing page images on-demand and cache them

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* feat: expose scale for export of page images and document elements

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* fix comment

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-08-20 13:27:19 +02:00
Michele Dolfi
63d80edca2 feat: output page images and extracted bbox (#31) 
* Add assemble options and example saving pages and figures

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* add options for different page elements, improve example and flip name of assemble_options

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
 2024-08-12 18:25:45 +02:00
Panos Vagenas
d603137383 feat: add simplified single-doc conversion (#20) 
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
 2024-07-26 16:55:33 +02:00
Christoph Auer
e2d996753b Initial commit 2024-07-15 09:42:42 +02:00