Docling/docling/backend/md_backend.py
Christoph Auer 3023f18ba0
feat: Support AsciiDoc and Markdown input format (#168)
* updated the base-model and added the asciidoc_backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* updated the asciidoc backend

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Ensure all models work only on valid pages (#158)

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* ci: run ci also on forks (#160)


---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>

* fix: fix legacy doc ref (#162)

Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>

* docs: typo fix (#155)

* Docs: Typo fix

- Corrected spelling of invidual to automatic

Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>

* add synchronize event for forks

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>

* feat: add coverage_threshold to skip OCR for small images (#161)

* feat: add coverage_threshold to skip OCR for small images

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* filter individual boxes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* rename option

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* chore: bump version to 2.1.0 [skip ci]

* adding tests for asciidocs

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* first working asciidoc parser

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* reformatted the code

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* adding test_02.asciidoc

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Drafting Markdown backend via Marko library

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* work in progress on MD backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* md_backend produces docling document with headers, paragraphs, lists

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Improvements in md parsing

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Detecting and assembling tables in markdown in temporary buffers

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Added initial docling table support to md_backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Cleaned code, improved logging for MD

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixes MyPy requirements, and rest of pre-commit

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed example run_md, added origin info to md_backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* working on asciidocs, struggling with ImageRef

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* able to parse the captions and image uri's

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* fixed the mypy

Signed-off-by: Peter Staar <taa@zurich.ibm.com>

* Update all backends with proper filename in DocumentOrigin

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update to docling-core v2.1.0

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fixes for MD Backend, to avoid duplicated text inserts into docling doc

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fix styling

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Added support for code blocks and fenced code in MD

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* cleaned prints

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Added proper processing of in-line textual elements for MD backend

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed issues with duplicated paragraphs and incorrect lists in pptx

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

* Fixed issue with group ordeering in pptx backend, added gebug log into run with formats

Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>

---------

Signed-off-by: Peter Staar <taa@zurich.ibm.com>
Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Signed-off-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Signed-off-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Signed-off-by: Maksym Lysak <mly@zurich.ibm.com>
Co-authored-by: Peter Staar <taa@zurich.ibm.com>
Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Co-authored-by: Panos Vagenas <35837085+vagenas@users.noreply.github.com>
Co-authored-by: ABHISHEK FADAKE <31249309+fadkeabhi@users.noreply.github.com>
Co-authored-by: Michele Dolfi <dol@zurich.ibm.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Maksym Lysak <mly@zurich.ibm.com>
2024-10-23 16:14:26 +02:00

294 lines
11 KiB
Python

import logging
from io import BytesIO
from pathlib import Path
from typing import Set, Union
import marko
import marko.ext
import marko.ext.gfm
import marko.inline
from docling_core.types.doc import (
DocItemLabel,
DoclingDocument,
DocumentOrigin,
GroupLabel,
TableCell,
TableData,
)
from marko import Markdown
from docling.backend.abstract_backend import DeclarativeDocumentBackend
from docling.datamodel.base_models import InputFormat
from docling.datamodel.document import InputDocument
_log = logging.getLogger(__name__)
class MarkdownDocumentBackend(DeclarativeDocumentBackend):
def __init__(self, in_doc: "InputDocument", path_or_stream: Union[BytesIO, Path]):
super().__init__(in_doc, path_or_stream)
_log.debug("MD INIT!!!")
# Markdown file:
self.path_or_stream = path_or_stream
self.valid = True
self.markdown = "" # To store original Markdown string
self.in_table = False
self.md_table_buffer: list[str] = []
self.inline_text_buffer = ""
try:
if isinstance(self.path_or_stream, BytesIO):
text_stream = self.path_or_stream.getvalue().decode("utf-8")
self.markdown = text_stream
if isinstance(self.path_or_stream, Path):
with open(self.path_or_stream, "r", encoding="utf-8") as f:
md_content = f.read()
self.markdown = md_content
self.valid = True
_log.debug(self.markdown)
except Exception as e:
raise RuntimeError(
f"Could not initialize MD backend for file with hash {self.document_hash}."
) from e
return
def close_table(self, doc=None):
if self.in_table:
_log.debug("=== TABLE START ===")
for md_table_row in self.md_table_buffer:
_log.debug(md_table_row)
_log.debug("=== TABLE END ===")
tcells = []
result_table = []
for n, md_table_row in enumerate(self.md_table_buffer):
data = []
if n == 0:
header = [t.strip() for t in md_table_row.split("|")[1:-1]]
for value in header:
data.append(value)
result_table.append(data)
if n > 1:
values = [t.strip() for t in md_table_row.split("|")[1:-1]]
for value in values:
data.append(value)
result_table.append(data)
for trow_ind, trow in enumerate(result_table):
for tcol_ind, cellval in enumerate(trow):
row_span = (
1 # currently supporting just simple tables (without spans)
)
col_span = (
1 # currently supporting just simple tables (without spans)
)
icell = TableCell(
text=cellval.strip(),
row_span=row_span,
col_span=col_span,
start_row_offset_idx=trow_ind,
end_row_offset_idx=trow_ind + row_span,
start_col_offset_idx=tcol_ind,
end_col_offset_idx=tcol_ind + col_span,
col_header=False,
row_header=False,
)
tcells.append(icell)
num_rows = len(result_table)
num_cols = len(result_table[0])
self.in_table = False
self.md_table_buffer = [] # clean table markdown buffer
# Initialize Docling TableData
data = TableData(num_rows=num_rows, num_cols=num_cols, table_cells=tcells)
# Populate
for tcell in tcells:
data.table_cells.append(tcell)
if len(tcells) > 0:
doc.add_table(data=data)
return
def process_inline_text(self, parent_element, doc=None):
# self.inline_text_buffer += str(text_in)
txt = self.inline_text_buffer.strip()
if len(txt) > 0:
doc.add_text(
label=DocItemLabel.PARAGRAPH,
parent=parent_element,
text=txt,
)
self.inline_text_buffer = ""
def iterate_elements(self, element, depth=0, doc=None, parent_element=None):
# Iterates over all elements in the AST
# Check for different element types and process relevant details
if isinstance(element, marko.block.Heading):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(
f" - Heading level {element.level}, content: {element.children[0].children}"
)
if element.level == 1:
doc_label = DocItemLabel.TITLE
else:
doc_label = DocItemLabel.SECTION_HEADER
snippet_text = element.children[0].children.strip()
parent_element = doc.add_text(
label=doc_label, parent=parent_element, text=snippet_text
)
elif isinstance(element, marko.block.List):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(f" - List {'ordered' if element.ordered else 'unordered'}")
list_label = GroupLabel.LIST
if element.ordered:
list_label = GroupLabel.ORDERED_LIST
parent_element = doc.add_group(
label=list_label, name=f"list", parent=parent_element
)
elif isinstance(element, marko.block.ListItem):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(" - List item")
snippet_text = str(element.children[0].children[0].children)
is_numbered = False
if parent_element.label == GroupLabel.ORDERED_LIST:
is_numbered = True
doc.add_list_item(
enumerated=is_numbered, parent=parent_element, text=snippet_text
)
elif isinstance(element, marko.inline.Image):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(f" - Image with alt: {element.title}, url: {element.dest}")
doc.add_picture(parent=parent_element, caption=element.title)
elif isinstance(element, marko.block.Paragraph):
self.process_inline_text(parent_element, doc)
elif isinstance(element, marko.inline.RawText):
_log.debug(f" - Paragraph (raw text): {element.children}")
snippet_text = str(element.children).strip()
# Detect start of the table:
if "|" in snippet_text:
# most likely part of the markdown table
self.in_table = True
if len(self.md_table_buffer) > 0:
self.md_table_buffer[len(self.md_table_buffer) - 1] += str(
snippet_text
)
else:
self.md_table_buffer.append(snippet_text)
else:
self.close_table(doc)
self.in_table = False
# most likely just inline text
self.inline_text_buffer += str(
element.children
) # do not strip an inline text, as it may contain important spaces
elif isinstance(element, marko.inline.CodeSpan):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(f" - Code Span: {element.children}")
snippet_text = str(element.children).strip()
doc.add_text(
label=DocItemLabel.CODE, parent=parent_element, text=snippet_text
)
elif isinstance(element, marko.block.CodeBlock):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(f" - Code Block: {element.children}")
snippet_text = str(element.children[0].children).strip()
doc.add_text(
label=DocItemLabel.CODE, parent=parent_element, text=snippet_text
)
elif isinstance(element, marko.block.FencedCode):
self.close_table(doc)
self.process_inline_text(parent_element, doc)
_log.debug(f" - Code Block: {element.children}")
snippet_text = str(element.children[0].children).strip()
doc.add_text(
label=DocItemLabel.CODE, parent=parent_element, text=snippet_text
)
elif isinstance(element, marko.inline.LineBreak):
self.process_inline_text(parent_element, doc)
if self.in_table:
_log.debug("Line break in a table")
self.md_table_buffer.append("")
elif isinstance(element, marko.block.HTMLBlock):
self.process_inline_text(parent_element, doc)
self.close_table(doc)
_log.debug("HTML Block: {}".format(element))
if (
len(element.children) > 0
): # If Marko doesn't return any content for HTML block, skip it
snippet_text = str(element.children).strip()
doc.add_text(
label=DocItemLabel.CODE, parent=parent_element, text=snippet_text
)
else:
if not isinstance(element, str):
self.close_table(doc)
_log.debug("Some other element: {}".format(element))
# Iterate through the element's children (if any)
if not isinstance(element, marko.block.ListItem):
if not isinstance(element, marko.block.Heading):
if not isinstance(element, marko.block.FencedCode):
# if not isinstance(element, marko.block.Paragraph):
if hasattr(element, "children"):
for child in element.children:
self.iterate_elements(child, depth + 1, doc, parent_element)
def is_valid(self) -> bool:
return self.valid
def unload(self):
if isinstance(self.path_or_stream, BytesIO):
self.path_or_stream.close()
self.path_or_stream = None
@classmethod
def supports_pagination(cls) -> bool:
return False
@classmethod
def supported_formats(cls) -> Set[InputFormat]:
return {InputFormat.MD}
def convert(self) -> DoclingDocument:
_log.debug("converting Markdown...")
origin = DocumentOrigin(
filename=self.file.name or "file",
mimetype="text/markdown",
binary_hash=self.document_hash,
)
doc = DoclingDocument(name=self.file.stem or "file", origin=origin)
if self.is_valid():
# Parse the markdown into an abstract syntax tree (AST)
marko_parser = Markdown()
parsed_ast = marko_parser.parse(self.markdown)
# Start iterating from the root of the AST
self.iterate_elements(parsed_ast, 0, doc, None)
else:
raise RuntimeError(
f"Cannot convert md with {self.document_hash} because the backend failed to init."
)
return doc