* refactor: upgrade BeautifulSoup4 with type hints
Upgrade dependency library BeautifulSoup4 to 4.13.3 (with type hints).
Refactor backends using BeautifulSoup4 to comply with type hints.
Apply style simplifications and improvements for consistency.
Remove variables and functions that are never used.
Remove code duplication between backends for parsing HTML tables.
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
* build: allow beautifulsoup4 version 4.12.3
Allow older version of beautifulsoup4 and ensure compatibility.
Update library dependencies.
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
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Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
* chore(xml-jats): separate authors and affiliations
In XML PubMed (JATS) backend, convert authors and affiliations as they
are typically rendered on PDFs.
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
* fix(xml-jats): replace new line character by a space
Instead of removing new line character from text, replace it by a space character.
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
* feat(xml-jats): improve existing parser and extend features
Partially support lists, respect reading order, parse more sections, support equations, better text formatting.
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
* chore(xml-jats): rename PubMed objects to JATS
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
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Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
