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feat(xml-jats): parse XML JATS documents (#967)

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* chore(xml-jats): separate authors and affiliations

In XML PubMed (JATS) backend, convert authors and affiliations as they
are typically rendered on PDFs.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* fix(xml-jats): replace new line character by a space

Instead of removing new line character from text, replace it by a space character.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* feat(xml-jats): improve existing parser and extend features

Partially support lists, respect reading order, parse more sections, support equations, better text formatting.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* chore(xml-jats): rename PubMed objects to JATS

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

---------

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
This commit is contained in:
Cesar Berrospi Ramis
2025-02-17 10:43:31 +01:00
committed by GitHub
parent e1436a8b05
commit 428b656793
35 changed files with 13688 additions and 30671 deletions
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8
docling/datamodel/document.py
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@@ -333,11 +333,11 @@ class _DocumentConversionInput(BaseModel):
):
input_format = InputFormat.XML_USPTO
if (
InputFormat.XML_PUBMED in formats
and "/NLM//DTD JATS" in xml_doctype
if InputFormat.XML_JATS in formats and (
"JATS-journalpublishing" in xml_doctype
or "JATS-archive" in xml_doctype
):
input_format = InputFormat.XML_PUBMED
input_format = InputFormat.XML_JATS
elif mime == "text/plain":
if InputFormat.XML_USPTO in formats and content_str.startswith("PATN\r\n"):